Function reference

All functions

TxpModel() txpSlices(<TxpModel>) `txpSlices<-`(<TxpModel>) txpWeights(<TxpModel>) `txpWeights<-`(<TxpModel>) txpTransFuncs(<TxpModel>) `txpTransFuncs<-`(<TxpModel>) txpValueNames(<TxpModel>) names(<TxpModel>) `names<-`(<TxpModel>) length(<TxpModel>) merge(<TxpModel>,<TxpModel>)

ToxPi Model

TxpModelList() duplicated(<TxpModelList>) as.TxpModelList()

List of TxpModel objects

txpScores(<TxpResult>) txpSliceScores(<TxpResult>) txpRanks(<TxpResult>) txpResultParam(<TxpResult>) txpModel(<TxpResult>) txpIDs(<TxpResult>) `txpIDs<-`(<TxpResult>) txpWeights(<TxpResult>) txpSlices(<TxpResult>) txpTransFuncs(<TxpResult>) txpValueNames(<TxpResult>) `[`(<TxpResult>,<logical>,<missing>) `[`(<TxpResult>,<integer>,<missing>) `[`(<TxpResult>,<numeric>,<missing>) `[`(<TxpResult>,<character>,<missing>) length(<TxpResult>) sort(<TxpResult>) names(<TxpResult>) `names<-`(<TxpResult>) as.data.frame(<TxpResult>)

ToxPi Result

plot(<TxpResult>,<missing>) plot(<TxpResult>,<numeric>)

Plot TxpResult objects

TxpResultList() duplicated(<TxpResultList>) as.TxpResultList()

List of TxpResult objects

TxpResultParam-class TxpResultParam

ToxPi Result Parameters

TxpSlice() txpValueNames(<TxpSlice>) `txpValueNames<-`(<TxpSlice>) txpTransFuncs(<TxpSlice>) `txpTransFuncs<-`(<TxpSlice>) length(<TxpSlice>) merge(<TxpSlice>,<TxpSlice>)

ToxPi Slice

TxpSliceList() txpValueNames(<TxpSliceList>) txpTransFuncs(<TxpSliceList>) duplicated(<TxpSliceList>) as.TxpSliceList()

List of TxpSlice objects

TxpTransFunc()

Numeric transformation function

TxpTransFuncList() as.TxpTransFuncList()

List of TxpTransFunc objects

boxLegendGrob()

Create a filled-box legend

pieGridGrob() grid.pieGridGrob()

Make grid of pieGrobs

pieGrob() grid.pieGrob()

Create a pie grob

txp_example_input txp_example_model

toxpiR data objects

txpCalculateScores()

Calculate ToxPi Scores for the given model and input data

txpExportGui()

Export comma-separated file intended for ToxPi GUI

txpValueNames() `txpValueNames<-`() txpTransFuncs() `txpTransFuncs<-`() txpSlices() `txpSlices<-`() txpWeights() `txpWeights<-`() txpScores() txpSliceScores() txpModel() txpIDs() `txpIDs<-`() txpRanks() txpResultParam()

toxpiR package generics

txpImportGui()

Import data file generated by ToxPi GUI